"""
Space time dataset import functions
Usage:
.. code-block:: python
import grass.temporal as tgis
input="/tmp/temp_1950_2012.tar.gz"
output="temp_1950_2012"
directory="/tmp"
title="My new dataset"
descr="May new shiny dataset"
location=None
link=True
exp=True
overr=False
create=False
tgis.import_stds(input, output, directory, title, descr, location,
link, exp, overr, create, "strds")
(C) 2012-2013 by the GRASS Development Team
This program is free software under the GNU General Public
License (>=v2). Read the file COPYING that comes with GRASS
for details.
:authors: Soeren Gebbert
"""
import os
import os.path
import tarfile
from .space_time_datasets import *
from .register import *
from . import factory
from .factory import *
import grass.script as gscript
from grass.exceptions import CalledModuleError
proj_file_name = "proj.txt"
init_file_name = "init.txt"
list_file_name = "list.txt"
# This global variable is for unique vector map export,
# since single vector maps may have several layer
# and therefore several attribute tables
imported_maps = {}
############################################################################
def _import_raster_maps_from_gdal(maplist, overr, exp, location, link, format_,
set_current_region=False, memory=300):
impflags = ""
if overr:
impflags += "o"
if exp or location:
impflags += "e"
for row in maplist:
name = row["name"]
if format_ == "GTiff":
filename = row["filename"] + ".tif"
elif format_ == "AAIGrid":
filename = row["filename"] + ".asc"
if not overr:
impflags += "o"
try:
if link:
gscript.run_command("r.external", input=filename,
output=name,
flags=impflags,
overwrite=gscript.overwrite())
else:
gscript.run_command("r.in.gdal", input=filename,
output=name, memory=memory,
flags=impflags,
overwrite=gscript.overwrite())
except CalledModuleError:
gscript.fatal(_("Unable to import/link raster map <%s> from file"
" %s.") % (name, filename))
# Set the color rules if present
filename = row["filename"] + ".color"
if os.path.isfile(filename):
try:
gscript.run_command("r.colors", map=name,
rules=filename,
overwrite=gscript.overwrite())
except CalledModuleError:
gscript.fatal(_("Unable to set the color rules for "
"raster map <%s>.") % name)
# Set the computational region from the last map imported
if set_current_region is True:
gscript.run_command("g.region", raster=name)
############################################################################
def _import_raster_maps(maplist, set_current_region=False):
# We need to disable the projection check because of its
# simple implementation
impflags = "o"
for row in maplist:
name = row["name"]
filename = row["filename"] + ".pack"
try:
gscript.run_command("r.unpack", input=filename,
output=name, flags=impflags,
overwrite=gscript.overwrite(),
verbose=True)
except CalledModuleError:
gscript.fatal(_("Unable to unpack raster map <%s> from file "
"%s.") % (name, filename))
# Set the computational region from the last map imported
if set_current_region is True:
gscript.run_command("g.region", raster=name)
############################################################################
def _import_vector_maps_from_gml(maplist, overr, exp, location, link):
impflags = "o"
if exp or location:
impflags += "e"
for row in maplist:
name = row["name"]
filename = row["filename"] + ".xml"
try:
gscript.run_command("v.in.ogr", input=filename,
output=name, flags=impflags,
overwrite=gscript.overwrite())
except CalledModuleError:
gscript.fatal(_("Unable to import vector map <%s> from file "
"%s.") % (name, filename))
############################################################################
def _import_vector_maps(maplist):
# We need to disable the projection check because of its
# simple implementation
impflags = "o"
for row in maplist:
# Separate the name from the layer
name = row["name"].split(":")[0]
# Import only unique maps
if name in imported_maps:
continue
filename = row["filename"] + ".pack"
try:
gscript.run_command("v.unpack", input=filename,
output=name, flags=impflags,
overwrite=gscript.overwrite(),
verbose=True)
except CalledModuleError:
gscript.fatal(_("Unable to unpack vector map <%s> from file "
"%s.") % (name, filename))
imported_maps[name] = name
############################################################################
[docs]def import_stds(input, output, directory, title=None, descr=None, location=None,
link=False, exp=False, overr=False, create=False,
stds_type="strds", base=None, set_current_region=False,
memory=300):
"""Import space time datasets of type raster and vector
:param input: Name of the input archive file
:param output: The name of the output space time dataset
:param directory: The extraction directory
:param title: The title of the new created space time dataset
:param descr: The description of the new created
space time dataset
:param location: The name of the location that should be created,
maps are imported into this location
:param link: Switch to link raster maps instead importing them
:param exp: Extend location extents based on new dataset
:param overr: Override projection (use location's projection)
:param create: Create the location specified by the "location"
parameter and exit.
Do not import the space time datasets.
:param stds_type: The type of the space time dataset that
should be imported
:param base: The base name of the new imported maps, it will be
extended using a numerical index.
:param memory: Cache size for raster rows, used in r.in.gdal
"""
global raise_on_error
old_state = gscript.raise_on_error
gscript.set_raise_on_error(True)
# Check if input file and extraction directory exits
if not os.path.exists(input):
gscript.fatal(_("Space time raster dataset archive <%s> not found")
% input)
if not create and not os.path.exists(directory):
gscript.fatal(_("Extraction directory <%s> not found") % directory)
tar = tarfile.open(name=input, mode='r')
# Check for important files
msgr = get_tgis_message_interface()
msgr.message(_("Checking validity of input file (size: %0.1f MB). Make take a while..."
% (os.path.getsize(input)/(1024*1024.0))))
members = tar.getnames()
# Make sure that the basenames of the files are used for comparison
member_basenames = [os.path.basename(name) for name in members]
if init_file_name not in member_basenames:
gscript.fatal(_("Unable to find init file <%s>") % init_file_name)
if list_file_name not in member_basenames:
gscript.fatal(_("Unable to find list file <%s>") % list_file_name)
if proj_file_name not in member_basenames:
gscript.fatal(_("Unable to find projection file <%s>") % proj_file_name)
msgr.message(_("Extracting data..."))
tar.extractall(path=directory)
tar.close()
# We use a new list file name for map registration
new_list_file_name = list_file_name + "_new"
# Save current working directory path
old_cwd = os.getcwd()
# Switch into the data directory
os.chdir(directory)
# Check projection information
if not location:
temp_name = gscript.tempfile()
temp_file = open(temp_name, "w")
proj_name = os.path.abspath(proj_file_name)
# We need to convert projection strings generated
# from other programs than g.proj into
# new line format so that the grass file comparison function
# can be used to compare the projections
proj_name_tmp = temp_name + "_in_projection"
proj_file = open(proj_name, "r")
proj_content = proj_file.read()
proj_content = proj_content.replace(" +", "\n+")
proj_content = proj_content.replace("\t+", "\n+")
proj_file.close()
proj_file = open(proj_name_tmp, "w")
proj_file.write(proj_content)
proj_file.close()
p = gscript.start_command("g.proj", flags="j", stdout=temp_file)
p.communicate()
temp_file.close()
if not gscript.compare_key_value_text_files(temp_name, proj_name_tmp,
sep="="):
if overr:
gscript.warning(_("Projection information does not match. "
"Proceeding..."))
else:
diff = ''.join(gscript.diff_files(temp_name, proj_name))
gscript.warning(_("Difference between PROJ_INFO file of "
"imported map and of current location:"
"\n{diff}").format(diff=diff))
gscript.fatal(_("Projection information does not match. "
"Aborting."))
# Create a new location based on the projection information and switch
# into it
old_env = gscript.gisenv()
if location:
try:
proj4_string = open(proj_file_name, 'r').read()
gscript.create_location(dbase=old_env["GISDBASE"],
location=location,
proj4=proj4_string)
# Just create a new location and return
if create:
os.chdir(old_cwd)
return
except Exception as e:
gscript.fatal(_("Unable to create location %(l)s. Reason: %(e)s")
% {'l': location, 'e': str(e)})
# Switch to the new created location
try:
gscript.run_command("g.mapset", mapset="PERMANENT",
location=location,
dbase=old_env["GISDBASE"])
except CalledModuleError:
gscript.fatal(_("Unable to switch to location %s") % location)
# create default database connection
try:
gscript.run_command("t.connect", flags="d")
except CalledModuleError:
gscript.fatal(_("Unable to create default temporal database "
"in new location %s") % location)
try:
# Make sure the temporal database exists
factory.init()
fs = "|"
maplist = []
mapset = get_current_mapset()
list_file = open(list_file_name, "r")
new_list_file = open(new_list_file_name, "w")
# get number of lines to correctly form the suffix
max_count = -1
for max_count, l in enumerate(list_file):
pass
max_count += 1
list_file.seek(0)
# Read the map list from file
line_count = 0
while True:
line = list_file.readline()
if not line:
break
line_list = line.split(fs)
# The filename is actually the base name of the map
# that must be extended by the file suffix
filename = line_list[0].strip().split(":")[0]
if base:
mapname = "%s_%s" % (base, gscript.get_num_suffix(line_count + 1,
max_count))
mapid = "%s@%s" % (mapname, mapset)
else:
mapname = filename
mapid = mapname + "@" + mapset
row = {}
row["filename"] = filename
row["name"] = mapname
row["id"] = mapid
row["start"] = line_list[1].strip()
row["end"] = line_list[2].strip()
new_list_file.write("%s%s%s%s%s\n" % (mapname, fs, row["start"],
fs, row["end"]))
maplist.append(row)
line_count += 1
list_file.close()
new_list_file.close()
# Read the init file
fs = "="
init = {}
init_file = open(init_file_name, "r")
while True:
line = init_file.readline()
if not line:
break
kv = line.split(fs)
init[kv[0]] = kv[1].strip()
init_file.close()
if "temporal_type" not in init or \
"semantic_type" not in init or \
"number_of_maps" not in init:
gscript.fatal(_("Key words %(t)s, %(s)s or %(n)s not found in init"
" file.") % {'t': "temporal_type",
's': "semantic_type",
'n': "number_of_maps"})
if line_count != int(init["number_of_maps"]):
gscript.fatal(_("Number of maps mismatch in init and list file."))
format_ = "GTiff"
type_ = "strds"
if "stds_type" in init:
type_ = init["stds_type"]
if "format" in init:
format_ = init["format"]
if stds_type != type_:
gscript.fatal(_("The archive file is of wrong space time dataset"
" type"))
# Check the existence of the files
if format_ == "GTiff":
for row in maplist:
filename = row["filename"] + ".tif"
if not os.path.exists(filename):
gscript.fatal(_("Unable to find GeoTIFF raster file "
"<%s> in archive.") % filename)
elif format_ == "AAIGrid":
for row in maplist:
filename = row["filename"] + ".asc"
if not os.path.exists(filename):
gscript.fatal(_("Unable to find AAIGrid raster file "
"<%s> in archive.") % filename)
elif format_ == "GML":
for row in maplist:
filename = row["filename"] + ".xml"
if not os.path.exists(filename):
gscript.fatal(_("Unable to find GML vector file "
"<%s> in archive.") % filename)
elif format_ == "pack":
for row in maplist:
if type_ == "stvds":
filename = str(row["filename"].split(":")[0]) + ".pack"
else:
filename = row["filename"] + ".pack"
if not os.path.exists(filename):
gscript.fatal(_("Unable to find GRASS package file "
"<%s> in archive.") % filename)
else:
gscript.fatal(_("Unsupported input format"))
# Check the space time dataset
id = output + "@" + mapset
sp = dataset_factory(type_, id)
if sp.is_in_db() and gscript.overwrite() is False:
gscript.fatal(_("Space time %(t)s dataset <%(sp)s> is already in"
" the database. Use the overwrite flag.") %
{'t': type_, 'sp': sp.get_id()})
# Import the maps
if type_ == "strds":
if format_ == "GTiff" or format_ == "AAIGrid":
_import_raster_maps_from_gdal(maplist, overr, exp, location,
link, format_, set_current_region,
memory)
if format_ == "pack":
_import_raster_maps(maplist, set_current_region)
elif type_ == "stvds":
if format_ == "GML":
_import_vector_maps_from_gml(
maplist, overr, exp, location, link)
if format_ == "pack":
_import_vector_maps(maplist)
# Create the space time dataset
if sp.is_in_db() and gscript.overwrite() is True:
gscript.info(_("Overwrite space time %(sp)s dataset "
"<%(id)s> and unregister all maps.") %
{'sp': sp.get_new_map_instance(None).get_type(),
'id': sp.get_id()})
sp.delete()
sp = sp.get_new_instance(id)
temporal_type = init["temporal_type"]
semantic_type = init["semantic_type"]
relative_time_unit = None
if temporal_type == "relative":
if "relative_time_unit" not in init:
gscript.fatal(_("Key word %s not found in init file.") %
("relative_time_unit"))
relative_time_unit = init["relative_time_unit"]
sp.set_relative_time_unit(relative_time_unit)
gscript.verbose(_("Create space time %s dataset.") %
sp.get_new_map_instance(None).get_type())
sp.set_initial_values(temporal_type=temporal_type,
semantic_type=semantic_type, title=title,
description=descr)
sp.insert()
# register the maps
fs = "|"
register_maps_in_space_time_dataset(
type=sp.get_new_map_instance(None).get_type(),
name=output, file=new_list_file_name, start="file",
end="file", unit=relative_time_unit, dbif=None, fs=fs,
update_cmd_list=False)
os.chdir(old_cwd)
except:
raise
# Make sure the location is switched back correctly
finally:
if location:
# Switch to the old location
try:
gscript.run_command("g.mapset", mapset=old_env["MAPSET"],
location=old_env["LOCATION_NAME"],
gisdbase=old_env["GISDBASE"])
except CalledModuleError:
grass.warning(_("Switching to original location failed"))
gscript.set_raise_on_error(old_state)
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