GRASS GIS Python scripting with script package

Parts of the API

• script package
  • Submodules
  • script.array module
  • script.core module
  • script.db module
  • script.raster module
  • script.raster3d module
  • script.setup module
  • script.task module
  • script.utils module
  • script.vector module
  • Module contents

Syntax

First, try a standard command in Console tab in Layer Manager in GRASS GUI:

r.info map=elevation -g

We are running r.info with an option map set to elevation Now, switch to Python tab and type the same command but in Python syntax:

grass.read_command('r.info', map='elevation', flags='g')

We used function read_command() from the grass.script package which is imported under the name grass in the Python tab in GRASS GUI. There are also other functions besides read_command() most notably run_command(), write_command() and parse_command(). The first parameter for functions from this group is the name of the GRASS module as string. Other parameters are options of the module. Python keyword arguments syntax is used for the options. Flags can be passed in a parameter flags where value of the parameter is a string containing all the flags we want to set. The general syntax is the following:

function_name('module.name', option1=value1, option2=..., flags='flagletters')

The function parameters are the same as module options, so you can just use standard module manual page to learn about the interface.

Most of the GRASS functionality is available through modules and all of them can be called using the functions above. However, in some cases, it is more advantageous to use specialized Python functions. This is the case for mapcalc() function (wrapper for r.mapcalc module) and list_strings() function (wrapper for g.list module).

Combining multiple modules

To launch a Python script from GUI, use File -> Launch Python script.

import grass.script as gscript

def main():
    input_raster = 'elevation'
    output_raster = 'high_areas'
    stats = gscript.parse_command('r.univar', map='elevation', flags='g')
    raster_mean = float(stats['mean'])
    raster_stddev = float(stats['stddev'])
    raster_high = raster_mean + raster_stddev
    gscript.mapcalc('{r} = {a} > {m}'.format(r=output_raster, a=input_raster,
                                             m=raster_high))

if __name__ == "__main__":
    main()

Processing many maps

import grass.script as gscript

def main():
    rasters = ['lsat7_2002_10', 'lsat7_2002_20', 'lsat7_2002_30', 'lsat7_2002_40']
    max_min = None
    for raster in rasters:
        stats = gscript.parse_command('r.univar', map=raster, flags='g')
        if max_min is None or max_min < stats['min']:
            max_min = stats['min']
    print max_min

if __name__ == "__main__":
    main()

Providing GRASS module interface to a script

#!/usr/bin/env python

#%module
#% description: Adds the values of two rasters (A + B)
#% keyword: raster
#% keyword: algebra
#% keyword: sum
#%end
#%option G_OPT_R_INPUT
#% key: araster
#% description: Name of input raster A in an expression A + B
#%end
#%option G_OPT_R_INPUT
#% key: braster
#% description: Name of input raster B in an expression A + B
#%end
#%option G_OPT_R_OUTPUT
#%end


import sys

import grass.script as gscript


def main():
    options, flags = gscript.parser()
    araster = options['araster']
    braster = options['braster']
    output = options['output']

    gscript.mapcalc('{r} = {a} + {b}'.format(r=output, a=araster, b=braster))

    return 0


if __name__ == "__main__":
    sys.exit(main())

The options which has something like G_OPT_R_INPUT after the word option are called standard options. Their list is accessible in GRASS GIS C API documentation of STD_OPT enum from gis.h file. Always use standard options if possible. They are not only easier to use but also ensure consistency across the modules and easier maintanenace in case of updates to the parameters parsing system. Typically, you change description (and/or label), sometimes key and answer. There are also standard flags to be used with flag which work in the same way.

The examples of syntax of options and flags (without the G_OPT... part) can be obtained from any GRASS module using special --script flag. Alternatively, you can use GRASS source code to look how different scripts actually define and use their parameters.

Note that the previous code samples were missing some whitespace which Python PEP8 style guide requires but this last sample fulfills all the requirements. You should always use pep8 tool to check your syntax and style or set your editor to do it for you. Note also that although a some mistakes in Python code can be discovered only when executing the code due to the dynamic nature of Python, there is a large number of tools such as pep8 or pylint which can help you to identify problems in you Python code.