r.series.accumulate - GRASS GIS manual

Note: This document is for an older version of GRASS GIS that has been discontinued. You should upgrade, and read the current manual page.

NAME

r.series.accumulate - Makes each output cell value a accumulationfunction of the values assigned to the corresponding cells in the input raster map layers.

KEYWORDS

raster, series, accumulation

SYNOPSIS

r.series.accumulate

r.series.accumulate --help

r.series.accumulate [-nzf] [basemap=name] [input=name[,name,...]] [file=name] output=name [scale=float] [shift=float] [lower=name] [upper=name] [range=min,max] [limits=lower,upper] [method=string] [--overwrite] [--help] [--verbose] [--quiet] [--ui]

Flags:

-n: Propagate NULLs
-z: Do not keep files open
-f: Create a FCELL map (floating point single precision) as output
--overwrite: Allow output files to overwrite existing files
--help: Print usage summary
--verbose: Verbose module output
--quiet: Quiet module output
--ui: Force launching GUI dialog

Parameters:

basemap=name: Existing map to be added to output
input=name[,name,...]: Name of input raster map(s)
file=name: Input file with raster map names, one per line
output=name [required]: Name for output raster map
scale=float: Scale factor for input; Default: 1.0
shift=float: Shift factor for input; Default: 0.0
lower=name: The raster map specifying the lower accumulation limit, also called baseline
upper=name: The raster map specifying the upper accumulation limit, also called cutoff. Only applied to BEDD computation.
range=min,max: Ignore values outside this range
limits=lower,upper: Use these limits in case lower and/or upper input maps are not defined; Default: 10,30
method=string: This method will be applied to compute the accumulative values from the input maps; Options: gdd, bedd, huglin, mean; Default: gdd; gdd: Growing Degree Days or Winkler indices; bedd: Biologically Effective Degree Days; huglin: Huglin Heliothermal index; mean: Mean: sum(input maps)/(number of input maps)

DESCRIPTION
NOTES
EXAMPLES
SEE ALSO
REFERENCES
AUTHORS

DESCRIPTION

r.series.accumulate calculates (accumulated) raster value using growing degree days (GDDs)/Winkler indices's, Biologically Effective Degree Days (BEDD), Huglin heliothermal indices or an average approach from several input maps for a given day. Accumulation of e.g. degree-days to growing degree days (GDDs) can be done by providing a basemap with GDDs of the previous day.

The flag -a determines the average computation of the input raster maps. In case the flag is not set, the average calculation is:

    average = (min + max) / 2

In case the flag was set, the calculation changes to arithmetic mean

    average = sum(input maps) / (number of input maps)

GDD Growing Degree Days are calculated as

    gdd = average - lower

In case the -a is set, the Winkler indices are calculated instead of GDD, usually accumulated for the period April 1^st to October 31^st (northern hemisphere) or the period October 1^st to April 30^th (southern hemisphere).

BEDDs Biologically Effective Degree Days are calculated as

    bedd = average - lower

with an optional upper cutoff applied to the average instead of the temperature values.

The Huglin heliothermal index is calculated as

    huglin = (average + max) / 2 - lower

usually accumulated for the period April 1^st to September 30^th (northern hemisphere) or the period September 1^st to April 30^th (southern hemisphere).

Mean raster values are calculated as

    mean = average

For all the formulas min is the minimum value, max the maximum value and average the average value. The min, max and average values are automatically calculated from the input maps.

The shift and scale values are applied directly to the input values. The lower and upper maps, as well as the range options are applied to constrain the accumulation. In case the lower and upper maps are not provided the limits option with default values will be applied.

If an existing map is provided with the basemap option, the values of this map are added to the output.

NOTES

The scale and shift parameters are used to transform input values with

    new = old * scale + shift

With the -n flag, any cell for which any of the corresponding input cells are NULL is automatically set to NULL (NULL propagation) and the accumulated value is not calculated.

Negative results are set to 0 (zero).

Without the -n flag, all non-NULL cells are used for calculation.

If the range= option is given, any values which fall outside that range will be treated as if they were NULL. Note that the range is applied to the scaled and shifted input data. The range parameter can be set to low,high thresholds: values outside of this range are treated as NULL (i.e., they will be ignored by most aggregates, or will cause the result to be NULL if -n is given). The low,high thresholds are floating point, so use -inf or inf for a single threshold (e.g., range=0,inf to ignore negative values, or range=-inf,-200.4 to ignore values above -200.4).

The maximum number of raster maps that can be processed is given by the user-specific limit of the operating system. For example, the soft limits for users are typically 1024 files. The soft limit can be changed with e.g. ulimit -n 4096 (UNIX-based operating systems) but it cannot be higher than the hard limit. If the latter is too low, you can as superuser add an entry in:

/etc/security/limits.conf
# <domain>      <type>  <item>         <value>
your_username  hard    nofile          4096

This will raise the hard limit to 4096 files. Also have a look at the overall limit of the operating system

cat /proc/sys/fs/file-max

which on modern Linux systems is several 100,000 files.

Use the -z flag to analyze large amounts of raster maps without hitting open files limit and the file option to avoid hitting the size limit of command line arguments. Note that the computation using the file option is slower than with the input option. For every single row in the output map(s) all input maps are opened and closed. The amount of RAM will rise linearly with the number of specified input maps. The input and file options are mutually exclusive: the former is a comma separated list of raster map names and the latter is a text file with a new line separated list of raster map names.

EXAMPLES

Example with MODIS Land Surface Temperature, transforming values from Kelvin * 50 to degrees Celsius:

r.series.accumulate in=MOD11A1.Day,MOD11A1.Night,MYD11A1.Day,MYD11A1.Night out=MCD11A1.GDD \
      scale=0.02 shift=-273.15 limits=10,30

REFERENCES

Jones, G.V., Duff, A.A., Hall, A., Myers, J.W., 2010. Spatial analysis of climate in winegrape growing regions in the Western United States. Am. J. Enol. Vitic. 61, 313-326.

AUTHORS

Markus Metz and Soeren Gebbert (based on r.series)

SOURCE CODE

Available at: r.series.accumulate source code (history)

Latest change: Thursday Jan 26 14:10:26 2023 in commit: cdd84c130cea04b204479e2efdc75c742efc4843