NAME
r.texture - Generate images with textural features from a raster map.
KEYWORDS
raster,
algebra,
statistics,
texture,
parallel
SYNOPSIS
r.texture
r.texture --help
r.texture [-san] input=name output=basename [nprocs=integer] [size=value] [distance=value] [method=string[,string,...]] [--overwrite] [--help] [--verbose] [--quiet] [--ui]
Flags:
- -s
- Separate output for each angle (0, 45, 90, 135)
- Angles are counterclockwise from east: 0 is East to West, 45 is North-East to South-West
- -a
- Calculate all textural measurements
- -n
- Allow NULL cells in a moving window
- This will also avoid cropping along edges of the current region
- --overwrite
- Allow output files to overwrite existing files
- --help
- Print usage summary
- --verbose
- Verbose module output
- --quiet
- Quiet module output
- --ui
- Force launching GUI dialog
Parameters:
- input=name [required]
- Name of input raster map
- output=basename [required]
- Name for output basename raster map(s)
- nprocs=integer
- Number of threads for parallel computing
- Default: 1
- size=value
- The size of moving window (odd and >= 3)
- Default: 3
- distance=value
- The distance between two samples (>= 1)
- The distance must be smaller than the size of the moving window
- Default: 1
- method=string[,string,...]
- Textural measurement method
- Options: asm, contrast, corr, var, idm, sa, sv, se, entr, dv, de, moc1, moc2
r.texture creates raster maps with textural features from a
user-specified raster map layer. The module calculates textural features
based on spatial dependence matrices at 0, 45, 90, and 135
degrees.
In order to take into account the scale of the texture to be measured,
r.texture allows the user to define the size of the moving
window and the distance at which to compare pixel grey values. By
default the module averages the results over the 4 orientations, but the user
can also request output of the texture variables in 4 different orientations
(flag -s). Please note that angles are defined in degrees of east and
they increase counterclockwise, so 0 is East - West, 45 is North-East -
South-West, 90 is North - South, 135 is North-West - South-East.
The user can either chose one or several texture measures (see below for their
description) using the method parameter, or can request the creating
of maps for all available methods with the -a.
r.texture assumes grey levels ranging from 0 to 255 as input. The
input is automatically rescaled to 0 to 255 if the input map range is outside of
this range. In order to reduce noise in the input data (thus generally
reinforcing the textural features), and to speed up processing, it is
recommended that the user recode the data using equal-probability quantization.
Quantization rules for r.recode can be generated with r.quantile
-r using e.g 16 or 32 quantiles (see example below).
Texture is a feature of specific land cover classes in satellite imagery.
It is particularly useful in situations where spectral differences between
classes are small, but classes are distinguishable by their organisation on the
ground, often opposing natural to human-made spaces: cultivated fields vs meadows
or golf courses, palm tree plantations vs natural rain forest, but texture can
also be a natural phenomen: dune fields, different canopies due to different
tree species. The usefulness and use of texture is highly dependent on the
resolution of satellite imagery and on the scale of the human intervention or
the phenomenon that created the texture (also see the discussion of scale
dependency below). The user should observe the phenomenon visually in order to
determine an adequat setting of the size parameter.
The output of r.texture can constitute very useful additional variables
as input for image classification or image segmentation (object recognition).
It can be used in supervised classification algorithms such as
i.maxlik or i.smap,
or for the identification of objects in i.segment,
and/or for the characterization of these objects and thus, for example, as one
of the raster inputs of the
i.segment.stats
addon.
In general, several variables constitute texture: differences in grey level values,
coarseness as scale of grey level differences, presence or lack of directionality
and regular patterns. A texture can be characterized by tone (grey level intensity
properties) and structure (spatial relationships). Since textures are highly scale
dependent, hierarchical textures may occur.
r.texture uses the common texture model based on the so-called grey
level co-occurrence matrix as described by Haralick et al (1973). This matrix
is a two-dimensional histogram of grey levels for a pair of pixels which are
separated by a fixed spatial relationship. The matrix approximates the joint
probability distribution of a pair of pixels. Several texture measures are
directly computed from the Grey Level Co-occurrence Matrix (GLCM).
The provided measures can be categorized under first-order and
second-order statistics, with each playing a unique role in texture
analysis. First-order statistics consider the distribution of
individual pixel values without regard to spatial relationships, while
second-order statistics, particularly those derived from the Grey Level
Co-occurrence Matrix (GLCM), consider the spatial relationship of
pixels.
The following part offers brief explanations of the Haralick et al texture
measures (after Jensen 1996).
- Sum Average (SA):
Sum Average measures the average gray level intensity of the sum of
pixel pairs within the moving window. It reflects the average intensity
of pixel pairs at specific distances and orientations, highlighting the
overall brightness level within the area.
- Entropy (ENT):
This measure analyses the randomness. It is high when the values of the
moving window have similar values. It is low when the values are close
to either 0 or 1 (i.e. when the pixels in the local window are
uniform).
- Difference Entropy (DE):
This metric quantifies the randomness or unpredictability in the
distribution of differences between the grey levels of pixel pairs. It
is a measure of the entropy of the pixel-pair difference histogram,
capturing texture granularity.
- Sum Entropy (SE): Similar to Difference Entropy, Sum Entropy measures
the randomness or unpredictability, but in the context of the sum of the
grey levels of pixel pairs. It evaluates the entropy of the pixel-pair
sum distribution, providing insight into the complexity of texture in
terms of intensity variation.
- Variance (VAR):
A measure of gray tone variance within the moving window (second-order
moment about the mean)
- Difference Variance (DV):
This is a measure of the variance or spread of the differences in grey
levels between pairs of pixels within the moving window. It quantifies
the contrast variability between pixels, indicating texture smoothness
or roughness.
- Sum Variance (SV):
In contrast to Difference Variance, Sum Variance measures the variance
of the sum of grey levels of pixel pairs. It assesses the variability
in the intensity levels of pairs of pixels, contributing to an
understanding of texture brightness or intensity variation.
Note that measures "mean", "kurtosis", "range", "skewness", and "standard
deviation" are available in
r.neighbors.
The second-order statistics texture model is based on the so-called grey
level co-occurrence matrices (GLCM; after Haralick 1979).
- Angular Second Moment (ASM, also called Uniformity):
This is a measure of local homogeneity and the opposite of Entropy.
High values of ASM occur when the pixels in the moving window are
very similar.
Note: The square root of the ASM is sometimes used as a texture measure,
and is called Energy.
- Inverse Difference Moment (IDM, also called Homogeneity):
This measure relates inversely to the contrast measure. It is a direct measure of the
local homogeneity of a digital image. Low values are associated with low homogeneity
and vice versa.
- Contrast (CON):
This measure analyses the image contrast (locally gray-level variations) as
the linear dependency of grey levels of neighboring pixels (similarity). Typically high,
when the scale of local texture is larger than the distance.
- Correlation (COR):
This measure analyses the linear dependency of grey levels of neighboring
pixels. Typically high, when the scale of local texture is larger than the
distance.
- Information Measures of Correlation (MOC):
These measures evaluate the complexity of the texture in terms of the
mutual dependence between the grey levels of pixel pairs. They
quantify how one pixel value informs or correlates with another,
offering insight into pattern predictability and structure regularity.
- Maximal Correlation Coefficient (MCC):
This statistic measures the highest correlation between any two
features of the texture, providing a single value that summarizes the
degree of linear dependency between grey levels in the texture. It's
often used to assess the overall correlation in the image, indicating
how predictable the texture patterns are from one pixel to the
next.
The computational region should be set to the input map with
g.region raster=<input map>, or aligned to the input map
with g.region align=<input map> if only a subregion
should be analyzed.
Note that the output of r.texture will always be smaller than
the current region as only cells for which there are no null cells and
for which all cells of the moving window are within the current region
will contain a value. The output will thus appear cropped at the margins.
Importantly, the input raster map cannot have more than 255 categories.
To enable parallel processing, the user can specify the number of threads
to be used with the
nprocs parameter (default 1).
Figures below show benchmark results running on
Intel® Core™ i9-10940X CPU @ 3.30GHz. See benchmark scripts
in the source code for more details.
Figure 1: Benchmark shows execution time for different
number of cells (1M, 2M, 4M, and 8M) and
the fixed size of window (3×3).
Figure 2: Benchmark shows efficiency for different
numbers of cells (1M, 2M, 4M, and 8M) and
the fixed size of window (3×3).
Figure 3: Benchmark shows execution time for different
sizes of windows
(3×3, 9×9,
15×15, and 27×27)
and the fixed number of cells (1M).
Figure 4: Benchmark shows efficiency for different
sizes of windows (3×3, 9×9,
15×15, and 27×27)
and the fixed number of cells (1M).
Calculation of Angular Second Moment of B/W orthophoto (North Carolina data set):
g.region raster=ortho_2001_t792_1m -p
# set grey level color table 0% black 100% white
r.colors ortho_2001_t792_1m color=grey
# extract grey levels
r.mapcalc "ortho_2001_t792_1m.greylevel = ortho_2001_t792_1m"
# texture analysis
r.texture ortho_2001_t792_1m.greylevel output=ortho_texture method=asm -s
# display
g.region n=221461 s=221094 w=638279 e=638694
d.shade color=ortho_texture_ASM_0 shade=ortho_2001_t792_1m
This calculates four maps (requested texture at four orientations):
ortho_texture_ASM_0, ortho_texture_ASM_45, ortho_texture_ASM_90, ortho_texture_ASM_135.
Reducing the number of gray levels (equal-probability quantizing):
g.region -p raster=ortho_2001_t792_1m
# enter as one line or with \
r.quantile input=ortho_2001_t792_1m quantiles=16 -r | r.recode \
input=ortho_2001_t792_1m output=ortho_2001_t792_1m_q16 rules=-
The recoded raster map can then be used as input for
r.texture as before.
Second example: analysis of IDM (homogeneity) on a simple raster with
North-South line pattern.
# import raster
r.in.ascii in=- output=lines << EOF
north: 9
south: 0
east: 9
west: 0
rows: 9
cols: 9
0 0 0 1 0 0 0 1 0
0 0 0 1 0 0 0 1 0
0 0 0 1 0 0 0 1 0
0 0 0 1 0 0 0 1 0
0 0 0 1 0 0 0 1 0
0 0 0 1 0 0 0 1 0
0 0 0 1 0 0 0 1 0
0 0 0 1 0 0 0 1 0
0 0 0 1 0 0 0 1 0
EOF
# adjust region to raster
g.region raster=lines
# calculate IDM (homogeneity) in all directions
r.texture -s lines method=idm output=text_lines
The following image shows the original map, the result in East-West direction
and the result in North-South direction, showing how texture can depend on
direction, with texture perfectly homogeneous (value=1) in the North-South
direction, but quite heterogeneous in East-West direction, except for those
areas where there are three columns of equal values (as size=3).
The overlaid grid highlights that the texture measures output maps
are cropped at the margins.
IDM textures according to direction
The algorithm was implemented after Haralick et al., 1973 and 1979.
The original code was taken by permission from pgmtexture, part of
PBMPLUS (Copyright 1991, Jef Poskanser and Texas Agricultural Experiment
Station, employer for hire of James Darrell McCauley). Manual page
of pgmtexture.
Over the years, the source code of r.texture was further improved.
- Haralick, R.M., K. Shanmugam, and I. Dinstein (1973). Textural features for
image classification. IEEE Transactions on Systems, Man, and
Cybernetics, SMC-3(6):610-621.
- Bouman, C. A., Shapiro, M. (1994). A Multiscale Random Field Model for
Bayesian Image Segmentation, IEEE Trans. on Image Processing, vol. 3, no. 2.
- Jensen, J.R. (1996). Introductory digital image processing. Prentice Hall.
ISBN 0-13-205840-5
- Haralick, R. (May 1979). Statistical and structural approaches to texture,
Proceedings of the IEEE, vol. 67, No.5, pp. 786-804
- Hall-Beyer, M. (2007). The GLCM Tutorial Home Page
(Grey-Level Co-occurrence Matrix texture measurements). University of Calgary, Canada
i.maxlik,
i.gensig,
i.smap,
i.gensigset,
i.segment.stats,
i.pca,
r.neighbors,
r.rescale
G. Antoniol - RCOST (Research Centre on Software Technology - Viale Traiano - 82100 Benevento)
C. Basco - RCOST (Research Centre on Software Technology - Viale Traiano - 82100 Benevento)
M. Ceccarelli - Facolta di Scienze, Universita del Sannio, Benevento
Markus Metz (correction and optimization of the initial version)
Moritz Lennert (documentation)
SOURCE CODE
Available at:
r.texture source code
(history)
Latest change: Friday Nov 29 00:12:28 2024 in commit: b8fc5a21d099218488d903245078864c33a77198
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