GRASS GIS manual: r.li.renyi

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NAME

r.li.renyi - Calculates Renyi's diversity index on a raster map

KEYWORDS

raster, landscape structure analysis, diversity index

SYNOPSIS

r.li.renyi
r.li.renyi help
r.li.renyi map=name conf=name alpha=string output=name [--overwrite] [--verbose] [--quiet]

Flags:

--overwrite: Allow output files to overwrite existing files
--verbose: Verbose module output
--quiet: Quiet module output

Parameters:

map=name: Name of input raster map
conf=name: Configuration file
alpha=string: Alpha value is the order of the generalized entropy
output=name: Name for output raster map

DESCRIPTION

r.li.renyi calculates the "Renyi's diversity index" as:
r.li.renyi formula

with:

H: Renyi entropy
alpha: order of the generalized entropy
i: patch type
S: number of different patch types
pi: proportional abundance of patch type i

NOTES

Do not use absolute path names for the config and output file/map parameters. If the "moving window" method was selected in r.li.setup, then the output will be a raster map, otherwise an ASCII file will be generated in the folder C:\Users\userxy\.r.li\output\ (MS-Windows) or $HOME/.r.li/output/ (GNU/Linux).

If the input raster map contains only NULL values then r.li.renyi returns -1.
If you want to change these -1 values to NULL, run subsequently on the resulting map:

r.null setnull=-1 map=my_map

after index calculation.

EXAMPLES

To calculate Renyi's diversity index on map my_map, using my_conf configuration file (previously defined with r.li.setup) and saving results in my_out, run:

r.li.renyi map=my_map conf=my_conf output=my_out alpha=0.6

Forest map (Spearfish sample dataset) example:

g.region rast=landcover.30m -p
r.mapcalc "forests = if(landcover.30m >= 41 && landcover.30m <= 43,1,null())"
r.li.renyi map=forests conf=movwindow7 out=forests_renyi_mov7_a06 alpha=0.6
r.univar forests_renyi_mov7_a06

Forest map (North Carolina sample dataset) example:

g.region rast=landclass96 -p
r.mapcalc "forests = if(landclass96 == 5, 1, null() )"
r.li.renyi map=forests conf=movwindow7 out=forests_renyi_mov7

# verify
r.univar forests_renyi_mov7
r.to.vect input=forests output=forests feature=area
d.mon x0
d.rast forests_renyi_mov7
d.vect forests type=boundary

REFERENCES

McGarigal, K., and B. J. Marks. 1995. FRAGSTATS: spatial pattern analysis program for quantifying landscape structure. USDA For. Serv. Gen. Tech. Rep. PNW-351. (PDF)

AUTHORS

Luca Delucchi and Duccio Rocchini, Fondazione E. Mach (Italy), based on the r.li.shannon code developed by Serena Pallecchi student of Computer Science University of Pisa (Italy).

Last changed: $Date: 2014-10-19 14:32:22 -0700 (Sun, 19 Oct 2014) $

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