NAME
r.li.shannon - Calculates Shannon's diversity index on a raster map
KEYWORDS
raster,
landscape structure analysis,
diversity index
SYNOPSIS
r.li.shannon
r.li.shannon --help
r.li.shannon input=name config=name output=name [--overwrite] [--help] [--verbose] [--quiet] [--ui]
Flags:
- --overwrite
- Allow output files to overwrite existing files
- --help
- Print usage summary
- --verbose
- Verbose module output
- --quiet
- Quiet module output
- --ui
- Force launching GUI dialog
Parameters:
- input=name [required]
- Name of input raster map
- config=name [required]
- Configuration file
- output=name [required]
- Name for output raster map
r.li.shannon calculates the "Shannon's diversity index" as:
with:
- i: patch type
- m: number of different patch types
- pi: proportional abundance of
patch type i
Do not use absolute path names for the
config and
output
file/map parameters.
If the "moving window" method was selected in
g.gui.rlisetup, then the
output will be a raster map, otherwise an ASCII file will be generated in
the folder
C:\Users\userxy\AppData\Roaming\GRASS8\r.li\output\
(MS-Windows) or
$HOME/.grass8/r.li/output/
(GNU/Linux).
If the input raster map contains only NULL values then r.li.shannon
returns NULL.
To calculate Shannon's diversity index on map
my_map, using
my_conf configuration file (previously defined with
g.gui.rlisetup) and saving results in
my_out, run:
r.li.shannon input=my_map conf=my_conf output=my_out
Forest map (Spearfish sample dataset) example:
g.region raster=landcover.30m -p
r.mapcalc "forests = if(landcover.30m >= 41 && landcover.30m <= 43,1,null())"
r.li.shannon input=forests conf=movwindow7 out=forests_shannon_mov7
r.univar forests_shannon_mov7
Forest map (North Carolina sample dataset) example:
g.region raster=landclass96 -p
r.mapcalc "forests = if(landclass96 == 5, 1, null() )"
r.li.shannon input=forests conf=movwindow7 out=forests_shannon_mov7
# verify
r.univar forests_shannon_mov7
r.to.vect input=forests output=forests type=area
d.mon wx0
d.rast forests_shannon_mov7
d.vect forests type=boundary
r.li (package overview),
g.gui.rlisetup
McGarigal, K., and B. J. Marks. 1995. FRAGSTATS: spatial pattern
analysis program for quantifying landscape structure. USDA For. Serv.
Gen. Tech. Rep. PNW-351. (
PDF)
Serena Pallecchi, student of Computer Science University of Pisa (Italy).
Commission from Faunalia Pontedera (PI), Italy (www.faunalia.it)
SOURCE CODE
Available at:
r.li.shannon source code
(history)
Latest change: Tuesday Dec 17 20:17:20 2024 in commit: ab90c5e5a9b668894da360fa97ffd4a51a38931e
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GRASS Development Team,
GRASS GIS 8.5.0dev Reference Manual